bent,
Guess it's my turn to welcome you to the NutzHouse! ;D
Here's how I see the operation of your 'mystery' board:
Red and Black - the power supply leads;
Yellow - Input.... it's coming directly from the output of the pup selector switch (the Master Tone pot is wired the same way as any other guitar);
Green - Output.... it goes to the Volume control's "hot" terminal;
Purple and Brown - the tone control network (the capacitors and such that make it work on the mids, instead of the highs).
The Output jack takes it's signal from the wiper of the Mid Boost control. That says that the PC board actually has two parts, a pre-amp and a tone section. They are inter-related to a degree, I doubt you could use just one side without the other, as a feedback loop exists between the Green and Brown wires.
For your purposes, it'd probably be best to treat this as Fender has, it's simply a black box, and there it sits. So long as you hook it up as designed, you should be able to use it in your modified circuitry without any problems.
in re: your first post:
Yes, all that you wish to accomplish is doable. The only fly in the ointment is, which "two resistors" need to be controlled via a switch for your planned two-step boost feature. (12dB to 25dB) That's not obvious at this point, we'll need more info if we're to help you any further.
I wonder what you'll accomlish with two volume controls.........
And a switch (rotary or whatever) for selecting capacitors is of dubious value, without any kind of variance (meaning a control pot). A capacitor has the effect of cutting off frequencies above a certain point in the spectrum.
How strong a cut is dependent on the resistance, which is why we make it variable in the first place. Keep in mind that as a you turn down the tone control (the Master, on your guitar), you don't decrease the frequency, you reduce the strength of the frequencies you are cutting - that's an important distinction.
More to the point, this has been done, Gibson called it the Vari-Tone circuit. A switch selected one of several capacitors in a range, and the Tone control varied the strength of the cut. Search on this forum for both 'Vari-Tone' and 'varitone' (go back at least 600 days). And as you might guess, google is your friend.
One last thought....... putting any kind of control out in the central area subjects it to continually being struck by your hand/pick/whatever. Not to mention, your hand gets sore from hitting it all the time, and you ge p.o.'ed from always losing your pick when it hits the knob. I suggest that you ponder the reason why literally all guitar makers locate their controls out of the normal path where a picking/strumming hand is most likely to flow. But that's just me being too lazy to buck the trend.
You of course are free to go where your muse takes you! ;D
HTH
sumgai